protex.testsystems

Functions

generate_complete_system

generate_h2o_system

Set up a solvated and parametrized system for IM1H/OAC.

generate_hpts_meoh_lj04_system

Set up a solvated and parametrized system for IM1H/OAC/HPTS/MEOH.

generate_hpts_meoh_system

Set up a solvated and parametrized system for IM1H/OAC/HPTS/MEOH.

generate_hpts_system

Set up a solvated and parametrized system for IM1H/OAC/HPTS.

generate_im1h_fora_system

Set up a solvated and parametrized system for IM1H/FORA.

generate_im1h_oac_dummy_system

Set up a solvated and parametrized system for IM1H/OAC.

generate_im1h_oac_system

Set up a solvated and parametrized system for IM1H/OAC.

generate_single_hpts_meoh_system

Set up a solvated and parametrized system for IM1H/OAC.

generate_single_im1h_oac_system

Set up a system with 1 IM1H, 1OAC, 1IM1 and 1 HOAC.

generate_small_box

Set up a solvated and parametrized system for IM1H/OAC.

generate_tfa_system

Set up a solvated and parametrized system for IM1H/OAC with tfa.

load_charmm_files

setup_simulation

setup_system